This is a comprehensive toolkit for epigenomic data analysis and visualization.
To install, please follow the instructions in our install page
A comprehensive R package for analyzing epigenomic data including ChIP-seq and CUT&Tag experiments. Provides functions for count matrix processing, quality control, clustering analysis, differential region identification, motif enrichment, fragment decomposition, and advanced visualization including heatmaps and scatter plots. Supports limma-voom pipeline for differential analysis and integrates with RNA-seq data for multi-omics comparisons.